ClawAudit verdict

protein-phylogeny

88
🟢 Trusted
Low risk — reviewed by ClawAudit, behavior matches stated purpose

Local phylogenetic analysis workflow using standard bioinformatics tools (MAFFT, CD-HIT, trimAl); all stages operate on local sequence files with no network calls or credential access.

⚠ Flagged for review — coarse, uncorroborated signal, not a confirmed exploit. Review the config yourself before installing.

Automated static analysis — not a human review. ClawAudit flags capabilities, not confirmed intent, and can produce false positives. Disagree with this verdict? Use Dispute below.

18
security
90
transparency
70
maintenance

Findings (5)

Pattern match critical

Unicode homoglyph detected — uses lookalike characters to evade pattern matching

references/03-coevolution.md · code

Pattern match high

References sudo — requests elevated privileges

TESTING.md · code · sudo

Pattern match high

apt-get install — installs system packages

TESTING.md · code · apt-get install

Pattern match medium

conda install — installs packages via conda

scripts/R/README.md · code · conda install

Pattern match low

pip3 install — installs Python packages at runtime

scripts/install_dependencies.sh · prose · downgraded · pip3 install

Why the tier is capped

Execution sink present in raw bytes (Hard Floor: class B/C). Final tier capped at Caution — cannot be lifted by any downgrade, example-payload opt-in, or allowlist.

Permissions & capabilities

No declared permissions — minimal attack surface.

Is this flag fair?

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